Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trub1Q8C0D0 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trub1Q8C0D0 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trub1Q8C0D0 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trub1Q8C0D0 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trub1Q8C0D0 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Gm44443-201ENSMUST00000204396 5633 ntBASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Gm13410-201ENSMUST00000117058 1415 ntBASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Gm12260-201ENSMUST00000122447 411 ntBASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.21■□□□□ 0.03
Trub1Q8C0D0 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Gm2451-201ENSMUST00000199447 999 ntBASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Gm10290-201ENSMUST00000200451 999 ntBASIC15.21■□□□□ 0.03
Trub1Q8C0D0 AC174742.1-201ENSMUST00000218272 304 ntBASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trub1Q8C0D0 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Trub1Q8C0D0 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Gm12892-201ENSMUST00000117367 1146 ntBASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Gm44492-201ENSMUST00000197012 141 ntBASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.2■□□□□ 0.02
Trub1Q8C0D0 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trub1Q8C0D0 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trub1Q8C0D0 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Trub1Q8C0D0 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Trub1Q8C0D0 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.19■□□□□ 0.02
Trub1Q8C0D0 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trub1Q8C0D0 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trub1Q8C0D0 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trub1Q8C0D0 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trub1Q8C0D0 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms