Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Ddx55Q6ZPL9 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Gm15678-201ENSMUST00000117573 960 ntBASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Gm15393-201ENSMUST00000120499 219 ntBASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Ddx55Q6ZPL9 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Gm15460-201ENSMUST00000118147 391 ntBASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Gm21009-201ENSMUST00000197169 1669 ntBASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Gm45667-201ENSMUST00000210380 1316 ntBASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Ddx55Q6ZPL9 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Gm5354-201ENSMUST00000182417 973 ntBASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Gm27701-201ENSMUST00000184498 110 ntBASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 AC139580.1-202ENSMUST00000223574 928 ntBASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ddx55Q6ZPL9 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Gm20628-201ENSMUST00000177363 3215 ntBASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Gm26917-202ENSMUST00000192833 3329 ntBASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ddx55Q6ZPL9 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms