Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC19.06■□□□□ 0.64
Trim28Q62318 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
Trim28Q62318 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Trim28Q62318 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Gm9229-201ENSMUST00000222777 126 ntBASIC19.06■□□□□ 0.64
Trim28Q62318 AC121598.1-201ENSMUST00000228224 1019 ntBASIC19.06■□□□□ 0.64
Trim28Q62318 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Trim28Q62318 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
Trim28Q62318 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim28Q62318 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC19.06■□□□□ 0.64
Trim28Q62318 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Trim28Q62318 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Trim28Q62318 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
Trim28Q62318 Gm12882-201ENSMUST00000121696 517 ntBASIC19.05■□□□□ 0.64
Trim28Q62318 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Trim28Q62318 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Trim28Q62318 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC19.05■□□□□ 0.64
Trim28Q62318 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC19.05■□□□□ 0.64
Trim28Q62318 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Trim28Q62318 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trim28Q62318 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
Trim28Q62318 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC19.04■□□□□ 0.64
Trim28Q62318 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC19.04■□□□□ 0.64
Trim28Q62318 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC19.04■□□□□ 0.64
Trim28Q62318 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC19.04■□□□□ 0.64
Trim28Q62318 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC19.04■□□□□ 0.64
Trim28Q62318 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC19.04■□□□□ 0.64
Trim28Q62318 Gm16215-201ENSMUST00000161990 637 ntBASIC19.04■□□□□ 0.64
Trim28Q62318 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Trim28Q62318 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC19.04■□□□□ 0.64
Trim28Q62318 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC19.04■□□□□ 0.64
Trim28Q62318 Gm4081-201ENSMUST00000195287 1838 ntBASIC19.04■□□□□ 0.64
Trim28Q62318 Gm14451-201ENSMUST00000121581 1542 ntBASIC19.04■□□□□ 0.64
Trim28Q62318 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trim28Q62318 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC19.03■□□□□ 0.64
Trim28Q62318 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Trim28Q62318 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC19.03■□□□□ 0.64
Trim28Q62318 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC19.03■□□□□ 0.64
Trim28Q62318 Gm22189-201ENSMUST00000103822 86 ntBASIC19.03■□□□□ 0.64
Trim28Q62318 Gm7488-201ENSMUST00000117148 684 ntBASIC19.03■□□□□ 0.64
Trim28Q62318 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 Gm23547-201ENSMUST00000158210 271 ntBASIC19.03■□□□□ 0.64
Trim28Q62318 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 AC124732.1-201ENSMUST00000221551 910 ntBASIC19.03■□□□□ 0.64
Trim28Q62318 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
Trim28Q62318 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trim28Q62318 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
Trim28Q62318 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trim28Q62318 Gm45667-201ENSMUST00000210380 1316 ntBASIC19.02■□□□□ 0.64
Trim28Q62318 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim28Q62318 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim28Q62318 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Trim28Q62318 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim28Q62318 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trim28Q62318 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim28Q62318 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim28Q62318 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
Trim28Q62318 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC19.02■□□□□ 0.64
Trim28Q62318 Gm6916-202ENSMUST00000205523 195 ntBASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms