Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC18.11■□□□□ 0.49
Trim27Q62158 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
Trim27Q62158 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC18.11■□□□□ 0.49
Trim27Q62158 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC18.11■□□□□ 0.49
Trim27Q62158 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC18.11■□□□□ 0.49
Trim27Q62158 AC131187.1-201ENSMUST00000224567 809 ntBASIC18.11■□□□□ 0.49
Trim27Q62158 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Trim27Q62158 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim27Q62158 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
Trim27Q62158 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Trim27Q62158 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Trim27Q62158 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trim27Q62158 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim27Q62158 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Trim27Q62158 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.1■□□□□ 0.49
Trim27Q62158 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.1■□□□□ 0.49
Trim27Q62158 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim27Q62158 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC18.1■□□□□ 0.49
Trim27Q62158 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim27Q62158 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trim27Q62158 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim27Q62158 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim27Q62158 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Trim27Q62158 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim27Q62158 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Trim27Q62158 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Trim27Q62158 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC18.09■□□□□ 0.49
Trim27Q62158 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC18.09■□□□□ 0.49
Trim27Q62158 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim27Q62158 Gm6944-201ENSMUST00000182449 1006 ntBASIC18.09■□□□□ 0.49
Trim27Q62158 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim27Q62158 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim27Q62158 Gm14451-201ENSMUST00000121581 1542 ntBASIC18.08■□□□□ 0.49
Trim27Q62158 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim27Q62158 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Trim27Q62158 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim27Q62158 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Trim27Q62158 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
Trim27Q62158 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 Gm5479-201ENSMUST00000160578 435 ntBASIC18.08■□□□□ 0.48
Trim27Q62158 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 Gm8000-201ENSMUST00000188378 592 ntBASIC18.08■□□□□ 0.48
Trim27Q62158 Gm37230-201ENSMUST00000194491 818 ntBASIC18.08■□□□□ 0.48
Trim27Q62158 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Trim27Q62158 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC18.08■□□□□ 0.48
Trim27Q62158 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim27Q62158 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms