Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Col11a1Q61245 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.23■□□□□ 0.19
Col11a1Q61245 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.23■□□□□ 0.19
Col11a1Q61245 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Col11a1Q61245 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Col11a1Q61245 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm10327-201ENSMUST00000105222 1002 ntBASIC16.23■□□□□ 0.19
Col11a1Q61245 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm5940-201ENSMUST00000117582 1068 ntBASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC16.23■□□□□ 0.19
Col11a1Q61245 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC16.23■□□□□ 0.19
Col11a1Q61245 Ighv8-14-201ENSMUST00000196781 358 ntBASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm4959-201ENSMUST00000197271 1044 ntBASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm9299-201ENSMUST00000206392 1140 ntBASIC16.23■□□□□ 0.19
Col11a1Q61245 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC16.23■□□□□ 0.19
Col11a1Q61245 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm7399-201ENSMUST00000032395 858 ntBASIC16.23■□□□□ 0.19
Col11a1Q61245 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Col11a1Q61245 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Dctn4-202ENSMUST00000223590 1530 ntBASIC16.23■□□□□ 0.19
Col11a1Q61245 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Col11a1Q61245 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
Col11a1Q61245 Gm13612-201ENSMUST00000119276 390 ntBASIC16.22■□□□□ 0.19
Col11a1Q61245 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC16.22■□□□□ 0.19
Col11a1Q61245 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC16.22■□□□□ 0.19
Col11a1Q61245 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC16.22■□□□□ 0.19
Col11a1Q61245 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC16.22■□□□□ 0.19
Col11a1Q61245 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Col11a1Q61245 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Col11a1Q61245 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Gm21038-201ENSMUST00000222205 1383 ntBASIC16.22■□□□□ 0.19
Col11a1Q61245 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.22■□□□□ 0.19
Col11a1Q61245 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC16.22■□□□□ 0.19
Col11a1Q61245 Gm12882-201ENSMUST00000121696 517 ntBASIC16.22■□□□□ 0.19
Col11a1Q61245 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC16.22■□□□□ 0.19
Col11a1Q61245 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col11a1Q61245 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Gm11839-201ENSMUST00000120647 1953 ntBASIC16.21■□□□□ 0.19
Col11a1Q61245 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC16.21■□□□□ 0.19
Col11a1Q61245 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Gm15957-201ENSMUST00000118893 974 ntBASIC16.21■□□□□ 0.19
Col11a1Q61245 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC16.21■□□□□ 0.19
Col11a1Q61245 Gm19184-201ENSMUST00000196798 928 ntBASIC16.21■□□□□ 0.19
Col11a1Q61245 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Col11a1Q61245 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC16.21■□□□□ 0.19
Col11a1Q61245 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col11a1Q61245 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col11a1Q61245 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC16.21■□□□□ 0.18
Col11a1Q61245 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC16.21■□□□□ 0.18
Col11a1Q61245 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col11a1Q61245 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col11a1Q61245 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Col11a1Q61245 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Gm12485-201ENSMUST00000119641 291 ntBASIC16.2■□□□□ 0.18
Col11a1Q61245 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC16.2■□□□□ 0.18
Col11a1Q61245 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Col11a1Q61245 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Col11a1Q61245 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC16.2■□□□□ 0.18
Col11a1Q61245 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col11a1Q61245 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms