Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 AC153794.1-201ENSMUST00000169148 126 ntBASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Gm10313-201ENSMUST00000095320 1002 ntBASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim40Q3UWA4 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Gm45293-201ENSMUST00000209754 1812 ntBASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC13.86□□□□□ -0.19
Trim40Q3UWA4 AA414768-201ENSMUST00000121924 1257 ntBASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Gm23634-201ENSMUST00000175071 91 ntBASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Matn2-206ENSMUST00000228570 2798 ntBASIC13.86□□□□□ -0.19
Trim40Q3UWA4 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC13.86□□□□□ -0.19
Trim40Q3UWA4 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Gm6728-201ENSMUST00000178117 1065 ntBASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Gm9172-201ENSMUST00000212092 954 ntBASIC13.85□□□□□ -0.19
Trim40Q3UWA4 AC127349.1-201ENSMUST00000224590 266 ntBASIC13.85□□□□□ -0.19
Trim40Q3UWA4 AC158538.2-201ENSMUST00000225455 906 ntBASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Trim40Q3UWA4 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 69 ms