Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
Col1a1P11087 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Col1a1P11087 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.08■□□□□ 0.33
Col1a1P11087 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col1a1P11087 Mir692-1-201ENSMUST00000102263 109 ntBASIC17.08■□□□□ 0.32
Col1a1P11087 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col1a1P11087 Gm12742-201ENSMUST00000117326 410 ntBASIC17.08■□□□□ 0.32
Col1a1P11087 Gm12390-201ENSMUST00000117897 397 ntBASIC17.08■□□□□ 0.32
Col1a1P11087 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC17.08■□□□□ 0.32
Col1a1P11087 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col1a1P11087 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Col1a1P11087 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC17.08■□□□□ 0.32
Col1a1P11087 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC17.08■□□□□ 0.32
Col1a1P11087 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col1a1P11087 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC17.08■□□□□ 0.32
Col1a1P11087 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col1a1P11087 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.08■□□□□ 0.32
Col1a1P11087 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.08■□□□□ 0.32
Col1a1P11087 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col1a1P11087 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col1a1P11087 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col1a1P11087 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col1a1P11087 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.07■□□□□ 0.32
Col1a1P11087 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC17.07■□□□□ 0.32
Col1a1P11087 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC17.07■□□□□ 0.32
Col1a1P11087 Gm18307-201ENSMUST00000206864 949 ntBASIC17.07■□□□□ 0.32
Col1a1P11087 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col1a1P11087 Gm45331-201ENSMUST00000209868 554 ntBASIC17.07■□□□□ 0.32
Col1a1P11087 Gm17794-201ENSMUST00000220252 955 ntBASIC17.07■□□□□ 0.32
Col1a1P11087 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col1a1P11087 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col1a1P11087 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.07■□□□□ 0.32
Col1a1P11087 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col1a1P11087 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col1a1P11087 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col1a1P11087 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC17.06■□□□□ 0.32
Col1a1P11087 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC17.06■□□□□ 0.32
Col1a1P11087 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC17.06■□□□□ 0.32
Col1a1P11087 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC17.06■□□□□ 0.32
Col1a1P11087 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC17.06■□□□□ 0.32
Col1a1P11087 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col1a1P11087 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC17.06■□□□□ 0.32
Col1a1P11087 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col1a1P11087 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col1a1P11087 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col1a1P11087 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Gm13226-201ENSMUST00000117838 404 ntBASIC17.05■□□□□ 0.32
Col1a1P11087 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC17.05■□□□□ 0.32
Col1a1P11087 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Gm6244-201ENSMUST00000178732 841 ntBASIC17.05■□□□□ 0.32
Col1a1P11087 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Gm27839-201ENSMUST00000184242 106 ntBASIC17.05■□□□□ 0.32
Col1a1P11087 Gm44799-201ENSMUST00000207639 1202 ntBASIC17.05■□□□□ 0.32
Col1a1P11087 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC17.05■□□□□ 0.32
Col1a1P11087 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.05■□□□□ 0.32
Col1a1P11087 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col1a1P11087 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.05■□□□□ 0.32
Col1a1P11087 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Col1a1P11087 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms