Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Hmgb3O54879 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Hmgb3O54879 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Smad9-201ENSMUST00000029371 5368 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Hmgb3O54879 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Gm13559-201ENSMUST00000120476 863 ntBASIC12.23□□□□□ -0.45
Hmgb3O54879 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Gm7507-201ENSMUST00000183053 1008 ntBASIC12.23□□□□□ -0.45
Hmgb3O54879 Gm18959-201ENSMUST00000208954 655 ntBASIC12.23□□□□□ -0.45
Hmgb3O54879 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Hmgb3O54879 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC12.23□□□□□ -0.45
Hmgb3O54879 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Hmgb3O54879 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Hmgb3O54879 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm7889-201ENSMUST00000185591 958 ntBASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm9484-201ENSMUST00000195892 1159 ntBASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC12.22□□□□□ -0.45
Hmgb3O54879 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm21559-201ENSMUST00000220638 855 ntBASIC12.22□□□□□ -0.45
Hmgb3O54879 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm9987-201ENSMUST00000069768 567 ntBASIC12.22□□□□□ -0.45
Hmgb3O54879 Gm8587-201ENSMUST00000076538 843 ntBASIC12.22□□□□□ -0.45
Hmgb3O54879 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Hmgb3O54879 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Hmgb3O54879 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC12.22□□□□□ -0.45
Hmgb3O54879 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Hmgb3O54879 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Gm8242-201ENSMUST00000193029 1420 ntBASIC12.21□□□□□ -0.45
Hmgb3O54879 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Hmgb3O54879 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Hmgb3O54879 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Hmgb3O54879 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms