Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav13d-3J3QMG8 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Trav13d-3J3QMG8 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC12.98□□□□□ -0.33
Trav13d-3J3QMG8 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Trav13d-3J3QMG8 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav13d-3J3QMG8 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Trav13d-3J3QMG8 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav13d-3J3QMG8 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trav13d-3J3QMG8 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Gm12892-201ENSMUST00000117367 1146 ntBASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Gm8749-201ENSMUST00000117737 331 ntBASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trav13d-3J3QMG8 Gm13410-201ENSMUST00000117058 1415 ntBASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Gm11779-201ENSMUST00000118541 368 ntBASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Mir8117-201ENSMUST00000184773 107 ntBASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trav13d-3J3QMG8 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trav13d-3J3QMG8 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Gm14026-201ENSMUST00000120625 1789 ntBASIC12.95□□□□□ -0.34
Trav13d-3J3QMG8 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms