Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC14.45□□□□□ -0.1
Chd3B1AR17 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC14.45□□□□□ -0.1
Chd3B1AR17 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.45□□□□□ -0.1
Chd3B1AR17 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm12428-201ENSMUST00000119844 727 ntBASIC14.45□□□□□ -0.1
Chd3B1AR17 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm9719-201ENSMUST00000162765 543 ntBASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm9726-201ENSMUST00000180321 678 ntBASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm27430-201ENSMUST00000184585 107 ntBASIC14.45□□□□□ -0.1
Chd3B1AR17 Gm44333-201ENSMUST00000197168 107 ntBASIC14.45□□□□□ -0.1
Chd3B1AR17 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC14.45□□□□□ -0.1
Chd3B1AR17 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Chd3B1AR17 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Carlr-201ENSMUST00000181515 2574 ntBASIC14.44□□□□□ -0.1
Chd3B1AR17 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Chd3B1AR17 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.44□□□□□ -0.1
Chd3B1AR17 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Gm45098-201ENSMUST00000207179 657 ntBASIC14.44□□□□□ -0.1
Chd3B1AR17 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.44□□□□□ -0.1
Chd3B1AR17 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Chd3B1AR17 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Gm21009-201ENSMUST00000197169 1669 ntBASIC14.43□□□□□ -0.1
Chd3B1AR17 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC14.43□□□□□ -0.1
Chd3B1AR17 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Gm5566-201ENSMUST00000116118 459 ntBASIC14.43□□□□□ -0.1
Chd3B1AR17 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Gm37305-201ENSMUST00000195714 4279 ntBASIC14.43□□□□□ -0.1
Chd3B1AR17 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.43□□□□□ -0.1
Chd3B1AR17 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Chd3B1AR17 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC14.43□□□□□ -0.1
Chd3B1AR17 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd3B1AR17 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.42□□□□□ -0.1
Chd3B1AR17 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Chd3B1AR17 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd3B1AR17 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd3B1AR17 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd3B1AR17 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Chd3B1AR17 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd3B1AR17 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Chd3B1AR17 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Chd3B1AR17 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Chd3B1AR17 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms