Protein–RNA interactions for Protein: S4R1M3

H2afb2, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb2S4R1M3 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
H2afb2S4R1M3 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
H2afb2S4R1M3 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
H2afb2S4R1M3 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
H2afb2S4R1M3 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
H2afb2S4R1M3 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
H2afb2S4R1M3 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Gm12134-201ENSMUST00000122109 520 ntBASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Gm10154-201ENSMUST00000084445 354 ntBASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
H2afb2S4R1M3 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Ap5m1-205ENSMUST00000227431 3757 ntBASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.77□□□□□ -0.04
H2afb2S4R1M3 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
H2afb2S4R1M3 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Gm16198-201ENSMUST00000118766 670 ntBASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Thap2-203ENSMUST00000218989 527 ntBASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
H2afb2S4R1M3 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
H2afb2S4R1M3 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms