Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Prpf40aQ9R1C7 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Prpf40aQ9R1C7 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 AC131586.3-201ENSMUST00000228355 1367 ntBASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Gm12008-201ENSMUST00000117791 755 ntBASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 AW822252-206ENSMUST00000208904 237 ntBASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Prpf40aQ9R1C7 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Prpf40aQ9R1C7 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Gm45683-201ENSMUST00000210825 1247 ntBASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Prpf40aQ9R1C7 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms