Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Gm16026-204ENSMUST00000162652 683 ntBASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Vps28Q9D1C8 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Vps28Q9D1C8 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Rprl2-201ENSMUST00000157150 290 ntBASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Vps28Q9D1C8 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Gm13332-201ENSMUST00000120451 1398 ntBASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Gm13365-201ENSMUST00000121188 973 ntBASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Gm5628-201ENSMUST00000222318 1049 ntBASIC15.13■□□□□ 0.01
Vps28Q9D1C8 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.13■□□□□ 0.01
Vps28Q9D1C8 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Vps28Q9D1C8 AC131743.5-201ENSMUST00000220775 1618 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms