Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC16.85■□□□□ 0.29
Trim11Q99PQ2 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim11Q99PQ2 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Trav13-3-201ENSMUST00000117226 336 ntBASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Gm12350-201ENSMUST00000121208 462 ntBASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim11Q99PQ2 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim11Q99PQ2 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.83■□□□□ 0.29
Trim11Q99PQ2 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Trim11Q99PQ2 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC16.83■□□□□ 0.29
Trim11Q99PQ2 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Trim11Q99PQ2 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim11Q99PQ2 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim11Q99PQ2 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Gm23547-201ENSMUST00000158210 271 ntBASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Gm2651-201ENSMUST00000203560 838 ntBASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trim11Q99PQ2 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms