Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ccdc9Q8VC31 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Gm45779-201ENSMUST00000212189 4064 ntBASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ccdc9Q8VC31 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ccdc9Q8VC31 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC17.79■□□□□ 0.44
Ccdc9Q8VC31 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms