Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Nup88Q8CEC0 Gm5366-201ENSMUST00000215494 1338 ntBASIC17.46■□□□□ 0.38
Nup88Q8CEC0 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Nup88Q8CEC0 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Gm43509-201ENSMUST00000196551 2594 ntBASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Gm43697-201ENSMUST00000199637 2581 ntBASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Gm37297-201ENSMUST00000192974 2384 ntBASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Nup88Q8CEC0 Ap5m1-205ENSMUST00000227431 3757 ntBASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC17.44■□□□□ 0.38
Nup88Q8CEC0 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.44■□□□□ 0.38
Nup88Q8CEC0 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.44■□□□□ 0.38
Nup88Q8CEC0 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Gm17968-201ENSMUST00000194902 784 ntBASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
Nup88Q8CEC0 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms