Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC17.21■□□□□ 0.35
Vps53Q8CCB4 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Vps53Q8CCB4 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Vps53Q8CCB4 Gm5366-201ENSMUST00000215494 1338 ntBASIC17.21■□□□□ 0.34
Vps53Q8CCB4 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Vps53Q8CCB4 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Ksr1-207ENSMUST00000226282 5260 ntBASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC17.19■□□□□ 0.34
Vps53Q8CCB4 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Pcgf5-211ENSMUST00000225920 6443 ntBASIC17.18■□□□□ 0.34
Vps53Q8CCB4 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Gm13616-201ENSMUST00000120600 222 ntBASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Gm13597-201ENSMUST00000121239 375 ntBASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Gm27301-201ENSMUST00000184012 127 ntBASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Gm45293-201ENSMUST00000209754 1812 ntBASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms