Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim9Q8C7M3 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Gm12260-201ENSMUST00000122447 411 ntBASIC16.3■□□□□ 0.2
Trim9Q8C7M3 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 AW822252-206ENSMUST00000208904 237 ntBASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim9Q8C7M3 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Mir8117-201ENSMUST00000184773 107 ntBASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.29■□□□□ 0.2
Trim9Q8C7M3 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim9Q8C7M3 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Gm11779-201ENSMUST00000118541 368 ntBASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Olfr286-202ENSMUST00000205305 969 ntBASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 CT025555.1-201ENSMUST00000225901 1217 ntBASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim9Q8C7M3 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 89.3 ms