Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Mir7023-201ENSMUST00000185093 64 ntBASIC20.79■□□□□ 0.92
Usp47Q8BY87 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Usp47Q8BY87 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Gm9867-201ENSMUST00000192212 2647 ntBASIC20.78■□□□□ 0.92
Usp47Q8BY87 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 AC149588.3-201ENSMUST00000227515 150 ntBASIC20.78■□□□□ 0.92
Usp47Q8BY87 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp47Q8BY87 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Gm12428-201ENSMUST00000119844 727 ntBASIC20.77■□□□□ 0.92
Usp47Q8BY87 Gm27680-201ENSMUST00000184192 160 ntBASIC20.77■□□□□ 0.92
Usp47Q8BY87 Gm20949-201ENSMUST00000206478 952 ntBASIC20.77■□□□□ 0.92
Usp47Q8BY87 Gm6888-201ENSMUST00000221983 706 ntBASIC20.77■□□□□ 0.92
Usp47Q8BY87 Dupd1-202ENSMUST00000224735 548 ntBASIC20.77■□□□□ 0.92
Usp47Q8BY87 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp47Q8BY87 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp47Q8BY87 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp47Q8BY87 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Usp47Q8BY87 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp47Q8BY87 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp47Q8BY87 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp47Q8BY87 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Gm24543-201ENSMUST00000103867 82 ntBASIC20.75■□□□□ 0.91
Usp47Q8BY87 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Usp47Q8BY87 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms