Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Syt7-205ENSMUST00000224135 1557 ntBASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.83
Usp40Q8BWR4 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Usp40Q8BWR4 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC20.2■□□□□ 0.83
Usp40Q8BWR4 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Gm15653-201ENSMUST00000119247 907 ntBASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Gm6473-201ENSMUST00000188572 1210 ntBASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Usp40Q8BWR4 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Gm4875-201ENSMUST00000118257 786 ntBASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 AC238811.1-201ENSMUST00000225302 441 ntBASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Usp40Q8BWR4 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Gm5745-201ENSMUST00000183748 313 ntBASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Gtpbp10-211ENSMUST00000198799 648 ntBASIC20.18■□□□□ 0.82
Usp40Q8BWR4 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Usp40Q8BWR4 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Gm24694-201ENSMUST00000180054 110 ntBASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Gm27663-201ENSMUST00000184839 110 ntBASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms