Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm22065-201ENSMUST00000103753 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm22066-201ENSMUST00000103761 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm24932-201ENSMUST00000103763 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm24115-201ENSMUST00000103799 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm22190-201ENSMUST00000103827 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm22191-201ENSMUST00000103831 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm24721-201ENSMUST00000103849 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm28018-201ENSMUST00000103869 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm26399-201ENSMUST00000103937 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm13015-201ENSMUST00000118674 204 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm25349-201ENSMUST00000177728 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm23616-201ENSMUST00000177797 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm25871-201ENSMUST00000177816 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm24752-201ENSMUST00000178240 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm24496-201ENSMUST00000178287 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm25649-201ENSMUST00000178476 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm25548-201ENSMUST00000178681 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm23147-201ENSMUST00000178841 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm26095-201ENSMUST00000179270 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm22171-201ENSMUST00000179283 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm23936-201ENSMUST00000179354 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm22619-201ENSMUST00000179516 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm25255-201ENSMUST00000179579 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm24755-201ENSMUST00000179691 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm26506-201ENSMUST00000179692 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm25086-201ENSMUST00000179931 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm23243-201ENSMUST00000180047 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm24659-201ENSMUST00000180212 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm24169-201ENSMUST00000180244 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm23689-201ENSMUST00000180354 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm27359-201ENSMUST00000184153 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm27785-201ENSMUST00000184268 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm27466-201ENSMUST00000184396 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Gm27703-201ENSMUST00000184836 110 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 AC131710.1-201ENSMUST00000228336 990 ntBASIC17.42■□□□□ 0.38
Trim56Q80VI1 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trim56Q80VI1 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Gm25287-201ENSMUST00000103846 110 ntBASIC17.41■□□□□ 0.38
Trim56Q80VI1 Gm22918-201ENSMUST00000103855 110 ntBASIC17.41■□□□□ 0.38
Trim56Q80VI1 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim56Q80VI1 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.4■□□□□ 0.38
Trim56Q80VI1 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Gm45098-201ENSMUST00000207179 657 ntBASIC17.4■□□□□ 0.38
Trim56Q80VI1 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim56Q80VI1 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms