Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Trim27Q62158 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trim27Q62158 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim27Q62158 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Trim27Q62158 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim27Q62158 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trim27Q62158 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Trim27Q62158 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Trim27Q62158 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Trim27Q62158 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC18.14■□□□□ 0.49
Trim27Q62158 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Trim27Q62158 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Gm43697-201ENSMUST00000199637 2581 ntBASIC18.14■□□□□ 0.49
Trim27Q62158 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim27Q62158 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Gm44645-201ENSMUST00000205492 1653 ntBASIC18.13■□□□□ 0.49
Trim27Q62158 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC18.13■□□□□ 0.49
Trim27Q62158 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Trim27Q62158 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Gm25911-201ENSMUST00000157621 56 ntBASIC18.13■□□□□ 0.49
Trim27Q62158 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Gm6443-201ENSMUST00000203599 874 ntBASIC18.13■□□□□ 0.49
Trim27Q62158 CT030684.1-201ENSMUST00000227292 914 ntBASIC18.13■□□□□ 0.49
Trim27Q62158 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim27Q62158 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Trim27Q62158 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim27Q62158 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim27Q62158 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Trim27Q62158 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 H2af-ps-201ENSMUST00000119066 295 ntBASIC18.12■□□□□ 0.49
Trim27Q62158 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC18.12■□□□□ 0.49
Trim27Q62158 Gm5264-201ENSMUST00000190584 848 ntBASIC18.12■□□□□ 0.49
Trim27Q62158 Gm5712-201ENSMUST00000199748 1043 ntBASIC18.12■□□□□ 0.49
Trim27Q62158 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim27Q62158 Klk2-ps-201ENSMUST00000205342 571 ntBASIC18.12■□□□□ 0.49
Trim27Q62158 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trim27Q62158 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trim27Q62158 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trim27Q62158 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
Trim27Q62158 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim27Q62158 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim27Q62158 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trim27Q62158 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC18.12■□□□□ 0.49
Trim27Q62158 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trim27Q62158 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim27Q62158 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trim27Q62158 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms