Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gm43509-201ENSMUST00000196551 2594 ntBASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gm27300-201ENSMUST00000184085 97 ntBASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gm27335-201ENSMUST00000184758 97 ntBASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 AC138767.1-201ENSMUST00000222661 415 ntBASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gm7461-201ENSMUST00000058918 827 ntBASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 AC154527.4-201ENSMUST00000224364 1667 ntBASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trav5d-4Q5R1F6 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Gm13294-201ENSMUST00000121757 1330 ntBASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Gm12350-201ENSMUST00000121208 462 ntBASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Gm45504-201ENSMUST00000211407 2107 ntBASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Gm11960-202ENSMUST00000181063 2858 ntBASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Trav5d-4Q5R1F6 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Gm27741-201ENSMUST00000185060 237 ntBASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Mzt1-203ENSMUST00000227948 952 ntBASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Trav5d-4Q5R1F6 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Trav5d-4Q5R1F6 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trav5d-4Q5R1F6 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trav5d-4Q5R1F6 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Trav5d-4Q5R1F6 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trav5d-4Q5R1F6 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trav5d-4Q5R1F6 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC12.71□□□□□ -0.38
Trav5d-4Q5R1F6 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Trav5d-4Q5R1F6 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Trav5d-4Q5R1F6 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Trav5d-4Q5R1F6 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms