Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim40Q3UWA4 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim40Q3UWA4 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim40Q3UWA4 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Trim40Q3UWA4 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC13.91□□□□□ -0.18
Trim40Q3UWA4 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim40Q3UWA4 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim40Q3UWA4 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim40Q3UWA4 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Trim40Q3UWA4 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Gm29518-201ENSMUST00000190858 372 ntBASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Trim40Q3UWA4 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Trim40Q3UWA4 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Trim40Q3UWA4 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Trim40Q3UWA4 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Trim40Q3UWA4 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Trim40Q3UWA4 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Trim40Q3UWA4 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 AC121577.1-201ENSMUST00000227302 707 ntBASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim40Q3UWA4 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Gm43056-201ENSMUST00000197865 2791 ntBASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Gm15794-201ENSMUST00000120182 631 ntBASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Rprl3-201ENSMUST00000157400 290 ntBASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 CT009510.1-201ENSMUST00000227972 270 ntBASIC13.88□□□□□ -0.19
Trim40Q3UWA4 AC117588.1-201ENSMUST00000228510 999 ntBASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim40Q3UWA4 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms