Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Limch1Q3UH68 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Limch1Q3UH68 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
Limch1Q3UH68 AC119177.1-201ENSMUST00000227647 1332 ntBASIC17.39■□□□□ 0.37
Limch1Q3UH68 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
Limch1Q3UH68 Gm38058-201ENSMUST00000194323 4368 ntBASIC17.39■□□□□ 0.37
Limch1Q3UH68 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Limch1Q3UH68 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Limch1Q3UH68 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Limch1Q3UH68 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.38■□□□□ 0.37
Limch1Q3UH68 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 CT010506.4-201ENSMUST00000225457 351 ntBASIC17.38■□□□□ 0.37
Limch1Q3UH68 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Gm5366-201ENSMUST00000215494 1338 ntBASIC17.38■□□□□ 0.37
Limch1Q3UH68 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Gm45504-201ENSMUST00000211407 2107 ntBASIC17.38■□□□□ 0.37
Limch1Q3UH68 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Limch1Q3UH68 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC17.37■□□□□ 0.37
Limch1Q3UH68 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Mir7036b-201ENSMUST00000184791 63 ntBASIC17.37■□□□□ 0.37
Limch1Q3UH68 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Limch1Q3UH68 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.36■□□□□ 0.37
Limch1Q3UH68 Mir1895-201ENSMUST00000122615 79 ntBASIC17.36■□□□□ 0.37
Limch1Q3UH68 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Gm27494-201ENSMUST00000184735 189 ntBASIC17.36■□□□□ 0.37
Limch1Q3UH68 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Limch1Q3UH68 Gm42632-201ENSMUST00000201707 2411 ntBASIC17.36■□□□□ 0.37
Limch1Q3UH68 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms