Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Gm27920-201ENSMUST00000183953 96 ntBASIC12.61□□□□□ -0.39
Col8a1Q00780 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Gm18018-201ENSMUST00000198273 408 ntBASIC12.61□□□□□ -0.39
Col8a1Q00780 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Col8a1Q00780 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col8a1Q00780 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Gm9867-201ENSMUST00000192212 2647 ntBASIC12.6□□□□□ -0.39
Col8a1Q00780 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Col8a1Q00780 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC12.6□□□□□ -0.39
Col8a1Q00780 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.6□□□□□ -0.39
Col8a1Q00780 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Col8a1Q00780 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col8a1Q00780 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Col8a1Q00780 Ldb3-207ENSMUST00000227819 1499 ntBASIC12.59□□□□□ -0.39
Col8a1Q00780 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC12.59□□□□□ -0.39
Col8a1Q00780 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Col8a1Q00780 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
Col8a1Q00780 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.59□□□□□ -0.39
Col8a1Q00780 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.59□□□□□ -0.39
Col8a1Q00780 Gm42612-201ENSMUST00000197986 623 ntBASIC12.59□□□□□ -0.39
Col8a1Q00780 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.59□□□□□ -0.39
Col8a1Q00780 Gm43170-201ENSMUST00000199827 612 ntBASIC12.59□□□□□ -0.39
Col8a1Q00780 Klk2-ps-201ENSMUST00000205342 571 ntBASIC12.59□□□□□ -0.39
Col8a1Q00780 Shd-206ENSMUST00000225145 998 ntBASIC12.59□□□□□ -0.39
Col8a1Q00780 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC12.59□□□□□ -0.39
Col8a1Q00780 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Col8a1Q00780 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Col8a1Q00780 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Col8a1Q00780 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms