Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Celf4-206ENSMUST00000224553 1729 ntBASIC12.76□□□□□ -0.37
Nkx3-1P97436 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Gm42466-201ENSMUST00000202099 1301 ntBASIC12.76□□□□□ -0.37
Nkx3-1P97436 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC12.76□□□□□ -0.37
Nkx3-1P97436 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Gm8242-201ENSMUST00000193029 1420 ntBASIC12.76□□□□□ -0.37
Nkx3-1P97436 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Nkx3-1P97436 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Gm6539-201ENSMUST00000119157 1064 ntBASIC12.75□□□□□ -0.37
Nkx3-1P97436 Gm14767-201ENSMUST00000121559 586 ntBASIC12.75□□□□□ -0.37
Nkx3-1P97436 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Nkx3-1P97436 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 AC164565.1-201ENSMUST00000217520 1484 ntBASIC12.74□□□□□ -0.37
Nkx3-1P97436 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Nkx3-1P97436 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Gm2423-201ENSMUST00000074863 733 ntBASIC12.74□□□□□ -0.37
Nkx3-1P97436 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Gm45605-201ENSMUST00000210265 4269 ntBASIC12.74□□□□□ -0.37
Nkx3-1P97436 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Nkx3-1P97436 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 68.7 ms