Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Rfx1P48377 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC17.69■□□□□ 0.42
Rfx1P48377 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC17.69■□□□□ 0.42
Rfx1P48377 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.69■□□□□ 0.42
Rfx1P48377 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC17.69■□□□□ 0.42
Rfx1P48377 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.69■□□□□ 0.42
Rfx1P48377 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
Rfx1P48377 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC17.69■□□□□ 0.42
Rfx1P48377 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Rfx1P48377 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC17.68■□□□□ 0.42
Rfx1P48377 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC17.68■□□□□ 0.42
Rfx1P48377 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Rfx1P48377 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.68■□□□□ 0.42
Rfx1P48377 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC17.68■□□□□ 0.42
Rfx1P48377 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.68■□□□□ 0.42
Rfx1P48377 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Rfx1P48377 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Rfx1P48377 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Gm45546-201ENSMUST00000211053 2394 ntBASIC17.68■□□□□ 0.42
Rfx1P48377 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC17.68■□□□□ 0.42
Rfx1P48377 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Rfx1P48377 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Rfx1P48377 Gm43056-201ENSMUST00000197865 2791 ntBASIC17.68■□□□□ 0.42
Rfx1P48377 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx1P48377 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Rfx1P48377 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Rfx1P48377 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Rfx1P48377 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.67■□□□□ 0.42
Rfx1P48377 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC17.67■□□□□ 0.42
Rfx1P48377 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC17.67■□□□□ 0.42
Rfx1P48377 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC17.67■□□□□ 0.42
Rfx1P48377 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx1P48377 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.66■□□□□ 0.42
Rfx1P48377 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.66■□□□□ 0.42
Rfx1P48377 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.66■□□□□ 0.42
Rfx1P48377 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Rfx1P48377 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.66■□□□□ 0.42
Rfx1P48377 Gm43767-201ENSMUST00000198933 381 ntBASIC17.66■□□□□ 0.42
Rfx1P48377 Gm6296-201ENSMUST00000222599 943 ntBASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms