Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Sdc1P18828 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Sdc1P18828 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Sdc1P18828 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Sdc1P18828 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12.14□□□□□ -0.47
Sdc1P18828 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Sdc1P18828 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC12.14□□□□□ -0.47
Sdc1P18828 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Sdc1P18828 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC12.14□□□□□ -0.47
Sdc1P18828 Gm3375-201ENSMUST00000203929 796 ntBASIC12.14□□□□□ -0.47
Sdc1P18828 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 AC122351.1-201ENSMUST00000220467 126 ntBASIC12.14□□□□□ -0.47
Sdc1P18828 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Sdc1P18828 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Sdc1P18828 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Sdc1P18828 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
Sdc1P18828 Gm5643-201ENSMUST00000117081 966 ntBASIC12.13□□□□□ -0.47
Sdc1P18828 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC12.13□□□□□ -0.47
Sdc1P18828 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC12.13□□□□□ -0.47
Sdc1P18828 Gm29994-201ENSMUST00000195495 1193 ntBASIC12.13□□□□□ -0.47
Sdc1P18828 AC159093.1-201ENSMUST00000227779 380 ntBASIC12.13□□□□□ -0.47
Sdc1P18828 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Sdc1P18828 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
Sdc1P18828 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Sdc1P18828 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.12□□□□□ -0.47
Sdc1P18828 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Sdc1P18828 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Sdc1P18828 Mir1199-201ENSMUST00000117015 119 ntBASIC12.12□□□□□ -0.47
Sdc1P18828 Gm13474-201ENSMUST00000122466 815 ntBASIC12.12□□□□□ -0.47
Sdc1P18828 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC12.12□□□□□ -0.47
Sdc1P18828 Trmt13-210ENSMUST00000198454 880 ntBASIC12.12□□□□□ -0.47
Sdc1P18828 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Sdc1P18828 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC12.12□□□□□ -0.47
Sdc1P18828 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Sdc1P18828 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Gm11405-201ENSMUST00000118689 1556 ntBASIC12.12□□□□□ -0.47
Sdc1P18828 Gm38346-201ENSMUST00000192379 2639 ntBASIC12.12□□□□□ -0.47
Sdc1P18828 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC12.12□□□□□ -0.47
Sdc1P18828 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Sdc1P18828 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC12.12□□□□□ -0.47
Sdc1P18828 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Sdc1P18828 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sdc1P18828 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms