Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Cdx1P18111 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC11.97□□□□□ -0.49
Cdx1P18111 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Cdx1P18111 AC162938.1-201ENSMUST00000213140 2323 ntBASIC11.97□□□□□ -0.49
Cdx1P18111 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Cdx1P18111 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC11.97□□□□□ -0.49
Cdx1P18111 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC11.97□□□□□ -0.49
Cdx1P18111 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Cdx1P18111 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
Cdx1P18111 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC11.97□□□□□ -0.49
Cdx1P18111 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Cdx1P18111 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC11.97□□□□□ -0.49
Cdx1P18111 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Gm37437-201ENSMUST00000194451 1937 ntBASIC11.97□□□□□ -0.49
Cdx1P18111 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Cdx1P18111 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
Cdx1P18111 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Cdx1P18111 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Cdx1P18111 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Gm42748-201ENSMUST00000199354 2341 ntBASIC11.96□□□□□ -0.49
Cdx1P18111 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC11.96□□□□□ -0.49
Cdx1P18111 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC11.96□□□□□ -0.49
Cdx1P18111 Gm18195-201ENSMUST00000207604 706 ntBASIC11.96□□□□□ -0.49
Cdx1P18111 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC11.96□□□□□ -0.49
Cdx1P18111 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Cdx1P18111 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Cdx1P18111 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Cdx1P18111 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Gm37844-201ENSMUST00000192473 4097 ntBASIC11.96□□□□□ -0.5
Cdx1P18111 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Cdx1P18111 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Cdx1P18111 Zkscan4-202ENSMUST00000225845 1506 ntBASIC11.96□□□□□ -0.5
Cdx1P18111 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Cdx1P18111 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC11.95□□□□□ -0.5
Cdx1P18111 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Gm9856-201ENSMUST00000217077 2578 ntBASIC11.95□□□□□ -0.5
Cdx1P18111 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC11.95□□□□□ -0.5
Cdx1P18111 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Cdx1P18111 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms