Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Col1a1P11087 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Col1a1P11087 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 AC114008.2-201ENSMUST00000227699 1347 ntBASIC17.12■□□□□ 0.33
Col1a1P11087 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.12■□□□□ 0.33
Col1a1P11087 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Mir1894-201ENSMUST00000122802 81 ntBASIC17.12■□□□□ 0.33
Col1a1P11087 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC17.12■□□□□ 0.33
Col1a1P11087 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Col1a1P11087 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC17.12■□□□□ 0.33
Col1a1P11087 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC17.12■□□□□ 0.33
Col1a1P11087 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Col1a1P11087 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC17.12■□□□□ 0.33
Col1a1P11087 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Gm43195-201ENSMUST00000200614 2332 ntBASIC17.11■□□□□ 0.33
Col1a1P11087 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.11■□□□□ 0.33
Col1a1P11087 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC17.11■□□□□ 0.33
Col1a1P11087 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Col1a1P11087 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC17.11■□□□□ 0.33
Col1a1P11087 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC17.11■□□□□ 0.33
Col1a1P11087 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Col1a1P11087 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC17.11■□□□□ 0.33
Col1a1P11087 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC17.11■□□□□ 0.33
Col1a1P11087 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC17.11■□□□□ 0.33
Col1a1P11087 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col1a1P11087 Gm9200-201ENSMUST00000118513 1354 ntBASIC17.1■□□□□ 0.33
Col1a1P11087 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.1■□□□□ 0.33
Col1a1P11087 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Col1a1P11087 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
Col1a1P11087 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col1a1P11087 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col1a1P11087 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
Col1a1P11087 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC17.1■□□□□ 0.33
Col1a1P11087 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Col1a1P11087 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 AC166574.6-201ENSMUST00000227889 1806 ntBASIC17.1■□□□□ 0.33
Col1a1P11087 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Col1a1P11087 AC131068.2-201ENSMUST00000226175 1453 ntBASIC17.1■□□□□ 0.33
Col1a1P11087 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.1■□□□□ 0.33
Col1a1P11087 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col1a1P11087 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Col1a1P11087 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col1a1P11087 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Mir1982-201ENSMUST00000157368 74 ntBASIC17.09■□□□□ 0.33
Col1a1P11087 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.09■□□□□ 0.33
Col1a1P11087 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Col1a1P11087 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col1a1P11087 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col1a1P11087 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms