Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm22065-201ENSMUST00000103753 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm22066-201ENSMUST00000103761 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm24932-201ENSMUST00000103763 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm24115-201ENSMUST00000103799 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm22190-201ENSMUST00000103827 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm22191-201ENSMUST00000103831 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm24721-201ENSMUST00000103849 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm28018-201ENSMUST00000103869 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm26399-201ENSMUST00000103937 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm25349-201ENSMUST00000177728 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm23616-201ENSMUST00000177797 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm25871-201ENSMUST00000177816 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm24752-201ENSMUST00000178240 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm24496-201ENSMUST00000178287 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm25649-201ENSMUST00000178476 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm25548-201ENSMUST00000178681 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm23147-201ENSMUST00000178841 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm26095-201ENSMUST00000179270 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm22171-201ENSMUST00000179283 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm23936-201ENSMUST00000179354 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm22619-201ENSMUST00000179516 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm25255-201ENSMUST00000179579 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm24755-201ENSMUST00000179691 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm26506-201ENSMUST00000179692 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm25086-201ENSMUST00000179931 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm23243-201ENSMUST00000180047 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm24659-201ENSMUST00000180212 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm24169-201ENSMUST00000180244 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm23689-201ENSMUST00000180354 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm27359-201ENSMUST00000184153 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm27785-201ENSMUST00000184268 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm27466-201ENSMUST00000184396 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm27703-201ENSMUST00000184836 110 ntBASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Ccdc3Q9D6Y1 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Ccdc3Q9D6Y1 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Gm43352-201ENSMUST00000196419 3065 ntBASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ccdc3Q9D6Y1 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms