Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Fbxl12-205ENSMUST00000140702 1555 ntBASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Ddx56Q9D0R4 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Gm7229-201ENSMUST00000214719 1007 ntBASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Ddx56Q9D0R4 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 AC131586.3-201ENSMUST00000228355 1367 ntBASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Gm16026-204ENSMUST00000162652 683 ntBASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Ddx56Q9D0R4 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 AC159295.1-201ENSMUST00000225326 940 ntBASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ddx56Q9D0R4 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms