Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
RTRAFQ9CQE8 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 CT009713.7-201ENSMUST00000224689 571 ntBASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
RTRAFQ9CQE8 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Acot6-202ENSMUST00000222921 3622 ntBASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Gm13168-201ENSMUST00000121771 632 ntBASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
RTRAFQ9CQE8 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Gm42632-201ENSMUST00000201707 2411 ntBASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Gm12008-201ENSMUST00000117791 755 ntBASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Gm14722-201ENSMUST00000118943 689 ntBASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Mir1668-201ENSMUST00000184114 107 ntBASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Gm7556-201ENSMUST00000201178 1084 ntBASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms