Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.6■□□□□ 0.25
Ushbp1Q8R370 AC155252.2-201ENSMUST00000226946 680 ntBASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ushbp1Q8R370 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.59■□□□□ 0.25
Ushbp1Q8R370 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ushbp1Q8R370 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ushbp1Q8R370 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
Ushbp1Q8R370 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ushbp1Q8R370 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.58■□□□□ 0.25
Ushbp1Q8R370 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.58■□□□□ 0.24
Ushbp1Q8R370 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ushbp1Q8R370 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ushbp1Q8R370 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Ushbp1Q8R370 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms