Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Gm9719-201ENSMUST00000162765 543 ntBASIC20.85■□□□□ 0.93
Usp47Q8BY87 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Usp47Q8BY87 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Usp47Q8BY87 AC158982.1-201ENSMUST00000228377 901 ntBASIC20.85■□□□□ 0.93
Usp47Q8BY87 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Usp47Q8BY87 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp47Q8BY87 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp47Q8BY87 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp47Q8BY87 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp47Q8BY87 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC20.83■□□□□ 0.92
Usp47Q8BY87 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC20.83■□□□□ 0.92
Usp47Q8BY87 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Usp47Q8BY87 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp47Q8BY87 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp47Q8BY87 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Gm16425-201ENSMUST00000118143 3130 ntBASIC20.82■□□□□ 0.92
Usp47Q8BY87 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Gm8410-201ENSMUST00000117225 605 ntBASIC20.82■□□□□ 0.92
Usp47Q8BY87 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC20.82■□□□□ 0.92
Usp47Q8BY87 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Gm6222-201ENSMUST00000120787 396 ntBASIC20.81■□□□□ 0.92
Usp47Q8BY87 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Gm25144-201ENSMUST00000179561 110 ntBASIC20.81■□□□□ 0.92
Usp47Q8BY87 Gm25352-201ENSMUST00000179815 110 ntBASIC20.81■□□□□ 0.92
Usp47Q8BY87 Gm27533-201ENSMUST00000183800 152 ntBASIC20.81■□□□□ 0.92
Usp47Q8BY87 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp47Q8BY87 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Usp47Q8BY87 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp47Q8BY87 Gm5566-201ENSMUST00000116118 459 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 57.5 ms