Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Scaf4Q6PFF0 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Scaf4Q6PFF0 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Gm4081-201ENSMUST00000195287 1838 ntBASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Scaf4Q6PFF0 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Scaf4Q6PFF0 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.61□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms