Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm46209-201ENSMUST00000217912 553 ntBASIC19.15■□□□□ 0.66
Trim28Q62318 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim28Q62318 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim28Q62318 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC19.14■□□□□ 0.66
Trim28Q62318 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Trim28Q62318 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim28Q62318 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim28Q62318 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Trim28Q62318 Camk2g-217ENSMUST00000226630 1937 ntBASIC19.14■□□□□ 0.65
Trim28Q62318 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Trim28Q62318 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC19.14■□□□□ 0.65
Trim28Q62318 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC19.14■□□□□ 0.65
Trim28Q62318 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Trim28Q62318 Gm27838-201ENSMUST00000184829 128 ntBASIC19.14■□□□□ 0.65
Trim28Q62318 CT025535.1-201ENSMUST00000227172 491 ntBASIC19.14■□□□□ 0.65
Trim28Q62318 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Syt7-204ENSMUST00000223586 1344 ntBASIC19.14■□□□□ 0.65
Trim28Q62318 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim28Q62318 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC19.13■□□□□ 0.65
Trim28Q62318 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 AA619741-201ENSMUST00000195095 646 ntBASIC19.13■□□□□ 0.65
Trim28Q62318 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Wdyhv1-206ENSMUST00000227142 786 ntBASIC19.13■□□□□ 0.65
Trim28Q62318 AC156016.3-201ENSMUST00000228623 344 ntBASIC19.13■□□□□ 0.65
Trim28Q62318 Gm2423-201ENSMUST00000074863 733 ntBASIC19.13■□□□□ 0.65
Trim28Q62318 Gm6263-201ENSMUST00000120029 1342 ntBASIC19.13■□□□□ 0.65
Trim28Q62318 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Gm45751-201ENSMUST00000210185 1573 ntBASIC19.13■□□□□ 0.65
Trim28Q62318 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim28Q62318 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Gm42632-201ENSMUST00000201707 2411 ntBASIC19.12■□□□□ 0.65
Trim28Q62318 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
Trim28Q62318 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Trim28Q62318 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC19.12■□□□□ 0.65
Trim28Q62318 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC19.12■□□□□ 0.65
Trim28Q62318 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC19.12■□□□□ 0.65
Trim28Q62318 Gm29667-201ENSMUST00000190817 490 ntBASIC19.12■□□□□ 0.65
Trim28Q62318 Mir125a-201ENSMUST00000083545 68 ntBASIC19.12■□□□□ 0.65
Trim28Q62318 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Trim28Q62318 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim28Q62318 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Trim28Q62318 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.11■□□□□ 0.65
Trim28Q62318 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Trim28Q62318 Gm5763-201ENSMUST00000155951 1530 ntBASIC19.11■□□□□ 0.65
Trim28Q62318 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Trim28Q62318 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC19.11■□□□□ 0.65
Trim28Q62318 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Trim28Q62318 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Gm4875-201ENSMUST00000118257 786 ntBASIC19.11■□□□□ 0.65
Trim28Q62318 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim28Q62318 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms