Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trim27Q62158 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim27Q62158 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Gm13233-201ENSMUST00000118760 1443 ntBASIC18.18■□□□□ 0.5
Trim27Q62158 Gm13244-201ENSMUST00000118855 1446 ntBASIC18.18■□□□□ 0.5
Trim27Q62158 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Gm4995-201ENSMUST00000117247 432 ntBASIC18.18■□□□□ 0.5
Trim27Q62158 Gm6226-201ENSMUST00000117765 1146 ntBASIC18.18■□□□□ 0.5
Trim27Q62158 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC18.18■□□□□ 0.5
Trim27Q62158 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC18.18■□□□□ 0.5
Trim27Q62158 Gm15483-201ENSMUST00000120338 456 ntBASIC18.18■□□□□ 0.5
Trim27Q62158 Gm15467-201ENSMUST00000120582 445 ntBASIC18.18■□□□□ 0.5
Trim27Q62158 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim27Q62158 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trim27Q62158 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim27Q62158 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Trim27Q62158 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC18.17■□□□□ 0.5
Trim27Q62158 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
Trim27Q62158 Gm4081-201ENSMUST00000195287 1838 ntBASIC18.17■□□□□ 0.5
Trim27Q62158 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC18.17■□□□□ 0.5
Trim27Q62158 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Trim27Q62158 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Trim27Q62158 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim27Q62158 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim27Q62158 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC18.16■□□□□ 0.5
Trim27Q62158 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC18.16■□□□□ 0.5
Trim27Q62158 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC18.16■□□□□ 0.5
Trim27Q62158 Gm45683-201ENSMUST00000210825 1247 ntBASIC18.16■□□□□ 0.5
Trim27Q62158 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Trim27Q62158 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim27Q62158 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim27Q62158 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim27Q62158 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trim27Q62158 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim27Q62158 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC18.15■□□□□ 0.5
Trim27Q62158 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC18.15■□□□□ 0.5
Trim27Q62158 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.15■□□□□ 0.5
Trim27Q62158 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim27Q62158 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trim27Q62158 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim27Q62158 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms