Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm6091-201ENSMUST00000098307 165 ntBASIC16.31■□□□□ 0.2
Col11a1Q61245 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.3■□□□□ 0.2
Col11a1Q61245 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC16.3■□□□□ 0.2
Col11a1Q61245 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Gm27514-201ENSMUST00000183692 110 ntBASIC16.3■□□□□ 0.2
Col11a1Q61245 Gm7287-201ENSMUST00000205267 602 ntBASIC16.3■□□□□ 0.2
Col11a1Q61245 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Gm7172-201ENSMUST00000218047 1152 ntBASIC16.3■□□□□ 0.2
Col11a1Q61245 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col11a1Q61245 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
Col11a1Q61245 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col11a1Q61245 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Gm11814-201ENSMUST00000119515 929 ntBASIC16.29■□□□□ 0.2
Col11a1Q61245 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC16.29■□□□□ 0.2
Col11a1Q61245 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col11a1Q61245 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC16.29■□□□□ 0.2
Col11a1Q61245 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Gm4804-201ENSMUST00000182234 999 ntBASIC16.29■□□□□ 0.2
Col11a1Q61245 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC16.29■□□□□ 0.2
Col11a1Q61245 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC16.29■□□□□ 0.2
Col11a1Q61245 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col11a1Q61245 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Gm7553-201ENSMUST00000185805 1426 ntBASIC16.29■□□□□ 0.2
Col11a1Q61245 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC16.29■□□□□ 0.2
Col11a1Q61245 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col11a1Q61245 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Col11a1Q61245 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC16.29■□□□□ 0.2
Col11a1Q61245 AC126253.1-201ENSMUST00000227974 824 ntBASIC16.29■□□□□ 0.2
Col11a1Q61245 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC16.28■□□□□ 0.2
Col11a1Q61245 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC16.28■□□□□ 0.2
Col11a1Q61245 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC16.28■□□□□ 0.2
Col11a1Q61245 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Gm15240-201ENSMUST00000118156 720 ntBASIC16.28■□□□□ 0.2
Col11a1Q61245 Mir8109-201ENSMUST00000184375 117 ntBASIC16.28■□□□□ 0.2
Col11a1Q61245 Gm43118-201ENSMUST00000199149 775 ntBASIC16.28■□□□□ 0.2
Col11a1Q61245 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC16.28■□□□□ 0.2
Col11a1Q61245 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col11a1Q61245 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC16.28■□□□□ 0.2
Col11a1Q61245 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col11a1Q61245 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Col11a1Q61245 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC16.27■□□□□ 0.2
Col11a1Q61245 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col11a1Q61245 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC16.27■□□□□ 0.2
Col11a1Q61245 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Col11a1Q61245 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.27■□□□□ 0.2
Col11a1Q61245 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col11a1Q61245 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.27■□□□□ 0.19
Col11a1Q61245 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col11a1Q61245 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col11a1Q61245 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col11a1Q61245 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col11a1Q61245 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Col11a1Q61245 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms