Protein–RNA interactions for Protein: Q5U4C3

Scaf1, Splicing factor, arginine/serine-rich 19, mousemouse

Known RBP Predictions only

Length 1,256 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf1Q5U4C3 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Scaf1Q5U4C3 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scaf1Q5U4C3 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scaf1Q5U4C3 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC19.24■□□□□ 0.67
Scaf1Q5U4C3 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scaf1Q5U4C3 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scaf1Q5U4C3 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 AC153872.1-201ENSMUST00000199539 128 ntBASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Gm15823-201ENSMUST00000064305 670 ntBASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scaf1Q5U4C3 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Gm9252-201ENSMUST00000172364 1602 ntBASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Gm12490-201ENSMUST00000120255 560 ntBASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Gm9522-201ENSMUST00000182394 926 ntBASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Gm8515-201ENSMUST00000194852 576 ntBASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Gm5425-201ENSMUST00000214125 459 ntBASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Gm6218-201ENSMUST00000219812 628 ntBASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scaf1Q5U4C3 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Gm15957-201ENSMUST00000118893 974 ntBASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Gm33320-201ENSMUST00000192232 530 ntBASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Gm42612-201ENSMUST00000197986 623 ntBASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Gm18018-201ENSMUST00000198273 408 ntBASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Gm43170-201ENSMUST00000199827 612 ntBASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Gm44608-201ENSMUST00000206827 855 ntBASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scaf1Q5U4C3 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scaf1Q5U4C3 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms