Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gm23547-201ENSMUST00000158210 271 ntBASIC12.79□□□□□ -0.36
Nkx3-1P97436 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gm25144-201ENSMUST00000179561 110 ntBASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gm25352-201ENSMUST00000179815 110 ntBASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gm18766-201ENSMUST00000189811 808 ntBASIC12.79□□□□□ -0.36
Nkx3-1P97436 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Wdyhv1-203ENSMUST00000226889 394 ntBASIC12.79□□□□□ -0.36
Nkx3-1P97436 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC12.79□□□□□ -0.36
Nkx3-1P97436 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Gm28630-201ENSMUST00000187806 498 ntBASIC12.78□□□□□ -0.36
Nkx3-1P97436 Gm43767-201ENSMUST00000198933 381 ntBASIC12.78□□□□□ -0.36
Nkx3-1P97436 AC158529.1-201ENSMUST00000223618 239 ntBASIC12.78□□□□□ -0.36
Nkx3-1P97436 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nkx3-1P97436 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC12.77□□□□□ -0.36
Nkx3-1P97436 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx3-1P97436 App-207ENSMUST00000227737 2827 ntBASIC12.77□□□□□ -0.36
Nkx3-1P97436 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Nkx3-1P97436 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Gm5745-201ENSMUST00000183748 313 ntBASIC12.77□□□□□ -0.37
Nkx3-1P97436 Mir7684-201ENSMUST00000183858 60 ntBASIC12.77□□□□□ -0.37
Nkx3-1P97436 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Nkx3-1P97436 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 AC124751.1-201ENSMUST00000222716 1408 ntBASIC12.77□□□□□ -0.37
Nkx3-1P97436 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Nkx3-1P97436 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms