Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC13.4□□□□□ -0.26
Rfx3P48381 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Rfx3P48381 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Gm14780-201ENSMUST00000118387 2737 ntBASIC13.4□□□□□ -0.26
Rfx3P48381 Gm25990-201ENSMUST00000102440 86 ntBASIC13.4□□□□□ -0.26
Rfx3P48381 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
Rfx3P48381 Gm11453-201ENSMUST00000117318 1007 ntBASIC13.4□□□□□ -0.26
Rfx3P48381 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Rfx3P48381 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC13.4□□□□□ -0.26
Rfx3P48381 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Rfx3P48381 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC13.4□□□□□ -0.26
Rfx3P48381 Gm7901-201ENSMUST00000120430 1597 ntBASIC13.4□□□□□ -0.26
Rfx3P48381 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
Rfx3P48381 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Rfx3P48381 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Rfx3P48381 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
Rfx3P48381 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC13.39□□□□□ -0.27
Rfx3P48381 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.39□□□□□ -0.27
Rfx3P48381 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC13.39□□□□□ -0.27
Rfx3P48381 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Rfx3P48381 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.38□□□□□ -0.27
Rfx3P48381 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Rfx3P48381 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Rfx3P48381 Gm7222-201ENSMUST00000117512 906 ntBASIC13.38□□□□□ -0.27
Rfx3P48381 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC13.38□□□□□ -0.27
Rfx3P48381 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC13.38□□□□□ -0.27
Rfx3P48381 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
Rfx3P48381 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Nupl1-207ENSMUST00000225311 2475 ntBASIC13.38□□□□□ -0.27
Rfx3P48381 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC13.38□□□□□ -0.27
Rfx3P48381 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Rfx3P48381 Gm8242-201ENSMUST00000193029 1420 ntBASIC13.38□□□□□ -0.27
Rfx3P48381 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Rfx3P48381 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Rfx3P48381 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Rfx3P48381 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Rfx3P48381 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Rfx3P48381 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Rfx3P48381 Gm38318-201ENSMUST00000195769 1706 ntBASIC13.37□□□□□ -0.27
Rfx3P48381 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Rfx3P48381 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Rfx3P48381 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms