Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.74■□□□□ 0.43
Rfx1P48377 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC17.74■□□□□ 0.43
Rfx1P48377 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx1P48377 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Rfx1P48377 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Rfx1P48377 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC17.73■□□□□ 0.43
Rfx1P48377 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Rfx1P48377 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Rfx1P48377 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.73■□□□□ 0.43
Rfx1P48377 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.73■□□□□ 0.43
Rfx1P48377 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Rfx1P48377 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx1P48377 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Rfx1P48377 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC17.72■□□□□ 0.43
Rfx1P48377 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Rfx1P48377 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC17.72■□□□□ 0.43
Rfx1P48377 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.72■□□□□ 0.43
Rfx1P48377 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.72■□□□□ 0.43
Rfx1P48377 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Rfx1P48377 Gm27704-201ENSMUST00000185094 107 ntBASIC17.72■□□□□ 0.43
Rfx1P48377 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Rfx1P48377 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC17.72■□□□□ 0.43
Rfx1P48377 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Gm28182-201ENSMUST00000188354 2477 ntBASIC17.72■□□□□ 0.43
Rfx1P48377 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx1P48377 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Rfx1P48377 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Rfx1P48377 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Rfx1P48377 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC17.71■□□□□ 0.43
Rfx1P48377 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC17.71■□□□□ 0.43
Rfx1P48377 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx1P48377 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Rfx1P48377 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Rfx1P48377 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Rfx1P48377 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
Rfx1P48377 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Rfx1P48377 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Rfx1P48377 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Rfx1P48377 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.7■□□□□ 0.42
Rfx1P48377 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Rfx1P48377 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.7■□□□□ 0.42
Rfx1P48377 Gm27646-201ENSMUST00000183989 110 ntBASIC17.7■□□□□ 0.42
Rfx1P48377 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Rfx1P48377 Mxra8os-201ENSMUST00000097740 687 ntBASIC17.7■□□□□ 0.42
Rfx1P48377 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx1P48377 Gm29361-201ENSMUST00000183323 2000 ntBASIC17.7■□□□□ 0.42
Rfx1P48377 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Rfx1P48377 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Rfx1P48377 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 85.8 ms