Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC12.17□□□□□ -0.46
Sdc1P18828 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
Sdc1P18828 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sdc1P18828 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sdc1P18828 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC12.16□□□□□ -0.46
Sdc1P18828 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Spsb2-203ENSMUST00000112473 1322 ntBASIC12.16□□□□□ -0.46
Sdc1P18828 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Gm15039-201ENSMUST00000118914 875 ntBASIC12.16□□□□□ -0.46
Sdc1P18828 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC12.16□□□□□ -0.46
Sdc1P18828 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC12.16□□□□□ -0.46
Sdc1P18828 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Gm7213-201ENSMUST00000215977 950 ntBASIC12.16□□□□□ -0.46
Sdc1P18828 Gm20049-201ENSMUST00000219950 730 ntBASIC12.16□□□□□ -0.46
Sdc1P18828 Odf3b-204ENSMUST00000227834 930 ntBASIC12.16□□□□□ -0.46
Sdc1P18828 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Sdc1P18828 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
Sdc1P18828 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sdc1P18828 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Sdc1P18828 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Sdc1P18828 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Gm18244-201ENSMUST00000219747 1566 ntBASIC12.15□□□□□ -0.46
Sdc1P18828 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC12.15□□□□□ -0.46
Sdc1P18828 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC12.15□□□□□ -0.46
Sdc1P18828 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC12.15□□□□□ -0.46
Sdc1P18828 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Sdc1P18828 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Gm2420-202ENSMUST00000202224 2249 ntBASIC12.15□□□□□ -0.46
Sdc1P18828 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC12.15□□□□□ -0.46
Sdc1P18828 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sdc1P18828 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Sdc1P18828 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms