Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msx1P13297 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msx1P13297 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msx1P13297 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msx1P13297 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Msx1P13297 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Msx1P13297 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Msx1P13297 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.06□□□□□ -0.16
Msx1P13297 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.06□□□□□ -0.16
Msx1P13297 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.06□□□□□ -0.16
Msx1P13297 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC14.06□□□□□ -0.16
Msx1P13297 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Gm27622-201ENSMUST00000183779 60 ntBASIC14.06□□□□□ -0.16
Msx1P13297 Gm20553-201ENSMUST00000204205 844 ntBASIC14.06□□□□□ -0.16
Msx1P13297 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.06□□□□□ -0.16
Msx1P13297 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Gm9519-201ENSMUST00000206108 1337 ntBASIC14.06□□□□□ -0.16
Msx1P13297 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Msx1P13297 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msx1P13297 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.05□□□□□ -0.16
Msx1P13297 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.05□□□□□ -0.16
Msx1P13297 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Msx1P13297 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.05□□□□□ -0.16
Msx1P13297 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC14.05□□□□□ -0.16
Msx1P13297 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC14.05□□□□□ -0.16
Msx1P13297 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC14.05□□□□□ -0.16
Msx1P13297 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14.05□□□□□ -0.16
Msx1P13297 Gm10253-201ENSMUST00000194270 940 ntBASIC14.05□□□□□ -0.16
Msx1P13297 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Msx1P13297 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Msx1P13297 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Msx1P13297 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
Msx1P13297 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Msx1P13297 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 AC126250.1-201ENSMUST00000228343 1768 ntBASIC14.04□□□□□ -0.16
Msx1P13297 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC14.04□□□□□ -0.16
Msx1P13297 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC14.04□□□□□ -0.16
Msx1P13297 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC14.04□□□□□ -0.16
Msx1P13297 Gm11424-201ENSMUST00000121929 829 ntBASIC14.04□□□□□ -0.16
Msx1P13297 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC14.04□□□□□ -0.16
Msx1P13297 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 CT009510.1-201ENSMUST00000227972 270 ntBASIC14.04□□□□□ -0.16
Msx1P13297 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC14.04□□□□□ -0.16
Msx1P13297 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Msx1P13297 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Msx1P13297 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC14.04□□□□□ -0.16
Msx1P13297 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.04□□□□□ -0.16
Msx1P13297 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Msx1P13297 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Msx1P13297 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Msx1P13297 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msx1P13297 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms