Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chmp6P0C0A3 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Chmp6P0C0A3 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Gm14494-201ENSMUST00000118786 435 ntBASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Gm13597-201ENSMUST00000121239 375 ntBASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chmp6P0C0A3 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
Chmp6P0C0A3 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Mir3113-201ENSMUST00000175478 76 ntBASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 CT009510.1-201ENSMUST00000227972 270 ntBASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Chmp6P0C0A3 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms