Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
Col3a1P08121 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC17.52■□□□□ 0.4
Col3a1P08121 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col3a1P08121 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC17.52■□□□□ 0.39
Col3a1P08121 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Col3a1P08121 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col3a1P08121 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col3a1P08121 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC17.51■□□□□ 0.39
Col3a1P08121 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.51■□□□□ 0.39
Col3a1P08121 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC17.51■□□□□ 0.39
Col3a1P08121 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Col3a1P08121 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Col3a1P08121 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Camk2g-217ENSMUST00000226630 1937 ntBASIC17.51■□□□□ 0.39
Col3a1P08121 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Efs-202ENSMUST00000227037 2540 ntBASIC17.51■□□□□ 0.39
Col3a1P08121 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col3a1P08121 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC17.5■□□□□ 0.39
Col3a1P08121 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col3a1P08121 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
Col3a1P08121 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Col3a1P08121 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col3a1P08121 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.5■□□□□ 0.39
Col3a1P08121 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.5■□□□□ 0.39
Col3a1P08121 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
Col3a1P08121 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Col3a1P08121 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Col3a1P08121 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Col3a1P08121 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Col3a1P08121 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col3a1P08121 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Col3a1P08121 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Col3a1P08121 Gm14042-201ENSMUST00000120139 833 ntBASIC17.49■□□□□ 0.39
Col3a1P08121 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC17.49■□□□□ 0.39
Col3a1P08121 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Col3a1P08121 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Col3a1P08121 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Col3a1P08121 Gm45195-201ENSMUST00000205597 1008 ntBASIC17.49■□□□□ 0.39
Col3a1P08121 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC17.49■□□□□ 0.39
Col3a1P08121 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC17.49■□□□□ 0.39
Col3a1P08121 AC135669.1-201ENSMUST00000213585 412 ntBASIC17.49■□□□□ 0.39
Col3a1P08121 Gm7653-201ENSMUST00000214567 508 ntBASIC17.49■□□□□ 0.39
Col3a1P08121 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC17.49■□□□□ 0.39
Col3a1P08121 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Col3a1P08121 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms