Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cops4O88544 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cops4O88544 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cops4O88544 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cops4O88544 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cops4O88544 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cops4O88544 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Cops4O88544 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Cops4O88544 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.71□□□□□ -0.21
Cops4O88544 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.71□□□□□ -0.21
Cops4O88544 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13.71□□□□□ -0.21
Cops4O88544 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.71□□□□□ -0.21
Cops4O88544 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Cops4O88544 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Cops4O88544 Olfr129-201ENSMUST00000122318 993 ntBASIC13.71□□□□□ -0.21
Cops4O88544 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC13.71□□□□□ -0.21
Cops4O88544 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.71□□□□□ -0.21
Cops4O88544 Gm44454-201ENSMUST00000198541 138 ntBASIC13.71□□□□□ -0.21
Cops4O88544 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 AC127349.1-201ENSMUST00000224590 266 ntBASIC13.71□□□□□ -0.21
Cops4O88544 AC158538.1-201ENSMUST00000225870 294 ntBASIC13.71□□□□□ -0.21
Cops4O88544 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Cops4O88544 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Cops4O88544 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC13.71□□□□□ -0.21
Cops4O88544 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cops4O88544 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cops4O88544 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cops4O88544 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC13.71□□□□□ -0.22
Cops4O88544 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cops4O88544 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cops4O88544 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cops4O88544 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cops4O88544 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
Cops4O88544 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cops4O88544 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC13.7□□□□□ -0.22
Cops4O88544 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
Cops4O88544 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Cops4O88544 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC13.7□□□□□ -0.22
Cops4O88544 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Gm8349-201ENSMUST00000182720 1003 ntBASIC13.7□□□□□ -0.22
Cops4O88544 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC13.7□□□□□ -0.22
Cops4O88544 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC13.7□□□□□ -0.22
Cops4O88544 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cops4O88544 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cops4O88544 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.69□□□□□ -0.22
Cops4O88544 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
Cops4O88544 Gm7284-201ENSMUST00000131667 944 ntBASIC13.69□□□□□ -0.22
Cops4O88544 Gm7286-201ENSMUST00000182691 1007 ntBASIC13.69□□□□□ -0.22
Cops4O88544 Gm27704-201ENSMUST00000185094 107 ntBASIC13.69□□□□□ -0.22
Cops4O88544 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC13.69□□□□□ -0.22
Cops4O88544 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Celf4-206ENSMUST00000224553 1729 ntBASIC13.69□□□□□ -0.22
Cops4O88544 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cops4O88544 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cops4O88544 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms