Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC12.29□□□□□ -0.44
Hmgb3O54879 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC12.29□□□□□ -0.44
Hmgb3O54879 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC12.29□□□□□ -0.44
Hmgb3O54879 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Hmgb3O54879 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Hmgb3O54879 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Gm42632-201ENSMUST00000201707 2411 ntBASIC12.28□□□□□ -0.44
Hmgb3O54879 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Gm12669-201ENSMUST00000122162 1009 ntBASIC12.28□□□□□ -0.44
Hmgb3O54879 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC12.28□□□□□ -0.44
Hmgb3O54879 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC12.28□□□□□ -0.44
Hmgb3O54879 AC127302.2-201ENSMUST00000215212 268 ntBASIC12.28□□□□□ -0.44
Hmgb3O54879 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Hmgb3O54879 Gm10812-201ENSMUST00000099864 546 ntBASIC12.28□□□□□ -0.44
Hmgb3O54879 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Hmgb3O54879 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
Hmgb3O54879 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Hmgb3O54879 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 AC167013.2-201ENSMUST00000228520 2684 ntBASIC12.28□□□□□ -0.44
Hmgb3O54879 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Hmgb3O54879 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Gm45546-201ENSMUST00000211053 2394 ntBASIC12.27□□□□□ -0.44
Hmgb3O54879 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Hmgb3O54879 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Gm20472-201ENSMUST00000174403 1240 ntBASIC12.27□□□□□ -0.45
Hmgb3O54879 Gm27011-201ENSMUST00000182352 972 ntBASIC12.27□□□□□ -0.45
Hmgb3O54879 Gm30437-201ENSMUST00000206086 1201 ntBASIC12.27□□□□□ -0.45
Hmgb3O54879 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC12.27□□□□□ -0.45
Hmgb3O54879 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC12.27□□□□□ -0.45
Hmgb3O54879 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Hmgb3O54879 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Hmgb3O54879 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Hmgb3O54879 Carlr-201ENSMUST00000181515 2574 ntBASIC12.26□□□□□ -0.45
Hmgb3O54879 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Hmgb3O54879 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Hmgb3O54879 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms